1. Phagocytosis-like cell engulfment by a planctomycete bacterium. Shiratori T, Suzuki S, Kakizawa Y, Ishida KI Nature communications 10 (1) 5529 (2019)
2. Taxon-rich Multigene Phylogenetic Analyses Resolve the Phylogenetic Relationship Among Deep-branching Stramenopiles. Thakur R, Shiratori T, Ishida KI Protist 170 (5) 125682 (2019)
3. Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. Yuichiro Kashiyama, Akiko Yokoyama, Takashi Shiratori, Sebastian Hess, Fabrice Not, Charles Bachy, Andres Gutierrez-Rodriguez, Jun Kawahara, Toshinobu Suzaki, Masami Nakazawa, Takahiro Ishikawa, Moe Maruyama, Mengyun Wang, Man Chen, Yingchun Gong, Kensuke Seto, Maiko Kagami, Yoko Hamamoto, Daiske Honda, Takahiro Umetani, Akira Shihongi, Motoki Kayama, Toshiki Matsuda, Junya Taira, Akinori Yabuki, Masashi Tsuchiya, Yoshihisa Hirakawa, Akane Kawaguchi, Mami Nomura, Atsushi Nakamura, Noriaki Namba, Mitsufumi Matsumoto, Tsuyoshi Tanaka, Tomoko Yoshino, Rina Higuchi, Akihiro Yamamoto, Tadanobu Maruyama, Aika Yamaguchi, Akihiro Uzuka, Shinya Miyagishima, Goro Tanifuji, Masanobu Kawachi, Yusuke Kinoshita, Hitoshi Tamiaki 13 (8) 1899 - 1910 (2019)
4. Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127. Nishimura Y, Shiratori T, Ishida KI, Hashimoto T, Ohkuma M, Inagaki Y Scientific reports 9 (1) 4850 (2019)
5. Novel alkenone-producing strains of genus Isochrysis (Haptophyta) isolated from Canadian saline lakes show temperature sensitivity of alkenones and alkenoates Hiroya Araie, Hideto Nakamura, Jaime L. Toney, Heather A. Haig, Julien Plancq, Takashi Shiratori, Peter R. Leavitt, Osamu Seki, Ken-ichiro Ishida, Ken Sawada, Iwane Suzuki, Yoshihiro Shiraiwa 121 89 - 103 (2018)
6. Phylogeny and Morphology of New Diplonemids from Japan Daria Tashyreva, Galina Prokopchuk, Akinori Yabuki, Binnypreet Kaur, Drahomíra Faktorová, Jan Votýpka, Chiho Kusaka, Katsunori Fujikura, Takashi Shiratori, Ken-Ichiro Ishida, Aleš Horák, Julius Lukeš 169 (2) 158 - 179 (2018)
7. Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group Matthew W Brown, Aaron A Heiss, Ryoma Kamikawa, Yuji Inagaki, Akinori Yabuki, Alexander K Tice, Takashi Shiratori, Ken-Ichiro Ishida, Tetsuo Hashimoto, Alastair G. B. Simpson, Andrew J. Roger 10 (2) 427 - 433 (2018)
8. Viridiuvalis adhaerens gen. et sp nov., a novel colony-forming chlorarachniophyte Takashi Shiratori, Sakuya Fujita, Tenma Shimizu, Takeshi Nakayama, Ken-ichiro Ishida 130 (6) 999 - 1012 (2017)
9. Pseudophyllomitus vesiculosus (Larsen and Patterson 1990) Lee, 2002, a Poorly Studied Phagotrophic Biflagellate is the First Characterized Member of Stramenopile Environmental Clade MAST-6 Takashi Shiratori, Rabindra Thakur, Ken-ichiro Ishida 168 (4) 439 - 451 (2017)
10. Trachyrhizium urniformis n. g., n. sp., a Novel Marine Filose Thecate Amoeba Related to a Cercozoan Environmental Clade (Novel Clade 4) Takashi Shiratori, Ken-ichiro Ishida 63 (6) 722 - 731 (2016)

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