原田 隆平 / Harada, Ryuhei

計算科学研究センター 准教授 / Associate Professor at Center for Computational Sciences

関連記事 / Related Articles in COTRE

ゼロからの創薬では遅すぎる！ スパコンの仮想生化学実験で、効く薬の候補を高速発見 Drug discovery from scratch is too late Identifying potential candidates faster through virtual biochemical experiments using supercomputers

 

論文 / Publication

  1. Phosphorylation on the Accessory Domain Disclose Nuclear Export Sequence of Yeast Histone Chaperone yNap1 Syo Ashida, Rikuri Morita, Yasuteru Shigeta, Ryuhei Harada Biochemistry, in preparation (2021)
  2. Comprehensive Predictions of Secondary Structures for Comparative Analysis in Different Species Rikuri Morita, Yasuteru Shigeta, Ryuhei Harada Journal of Structural Biology, in revision (Manuscript ID: JSB-20-257) (2021)
  3. Post-string Method: Estimation of Minimal Free Energy Path Rikuri Morita, Yasuteru Shigeta, Ryuhei Harada Journal of Chemical Information and Modeling, submitted (Manuscript ID ci-2021-001189) (2021)
  4. Membrane Permeability Evaluated from Solvation Free Energy Calculation of Cyclic Dipeptide Koki Yanagi, Ryuhei Harada, Yuki Mitsuta, Yasuteru Shigeta Journal of Computer Chemistry Japan (2021)
  5. Rare Event Sampling of Proteins Based on Distributed Molecular Dynamics Simulations Ryuhei Harada Japan Society of Theoretical Chemistry (2021)
  6. Independent Non-targeted Parallel Cascade Selection Molecular Dynamics for Enhancing Conformational Transitions of Proteins Takunori Yasuda, Rikuri Morita, Yasuteru Shigeta, Ryuhei Harada Journal of Chemical Theory and Computation, in preparation (2021)
  7. The Folding of Trp-cage is Regulated by Stochastic Flip of the Sidechain of Tryptophan Takunori Yasuda, Yasuteru Shigeta, Ryuhei Harada Chemistry Letters 50 (1) 162 - 165 (2021)
  8. Rearrangements of Water Molecules in Parallel Cascade Selection Molecular Dynamics Enhance Structural Explorations Rikuri Morita, Yasuteru Shigeta, Ryuhei Harada Bulletin Chemical Society of Japan 94 97 - 105 (2021)
  9. Enhanced Conformational Sampling Method Based on Anomaly Detection Parallel Cascade Selection Molecular Dynamics: ad-PaCS-MD Ryuhei Harada, Kota Yamaguchi, Yasuteru Shigeta Journal of Chemical Theory and Computation 16 (10) 6716 - 6725 (2020)
  10. The Molecular Mechanism on the Actin-Binding Domain of the Alpha-Actinin Ain1 Elucidated by Molecular Dynamics Simulations and Mutagenesis Experiments Rikuri Morita, Kentaro Nakano, Yasuteru Shigeta, Ryuhei Harada The Journal of Physical Chemistry B 124 (39) 8495 - 8503 (2020)

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※上記の論文リストは researchmapから取得した論文リストにDOIリンク等の情報を付加したものです。筑波大学研究者総覧(TRIOS)または researchmapの論文リストが更新されると後日反映されます。

知財 / Intellectual properties

  1. 特願2015-156703 : 情報処理装置, 指標次元抽出方法, および指標次元抽出プログラム 中村朋健, 原田隆平, 重田育照
  2. 特願15/228,873 : Information Processing Apparatus and Index Dimension Extracting Method Nakamura Tomotake, Harada Ryuhei, Shigeta Yasuteru
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